PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G1117
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 645aa    MW: 70576 Da    PI: 8.6361
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G1117genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05151173123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F r  nL+ H r H
  Gh_A05G1117 151 FVCEICNKGFQRDQNLQLHRRGH 173
                  89*******************88 PP

2zf-C2H212.30.0005227249123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H +t+
  Gh_A05G1117 227 WKCEKCSKKYAVQSDWKAHSKTC 249
                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-5150173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.95E-7150173No hitNo description
SMARTSM003550.017151173IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949151173IPR007087Zinc finger, C2H2
PROSITE patternPS000280153173IPR007087Zinc finger, C2H2
SMARTSM0035567192222IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-4215248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.95E-7222247No hitNo description
SMARTSM00355140227247IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MMKSFMFHQQ QQQQQQQQQQ QQVLEENMSN LTSASASGEA SVSSGNRTEA GSNYPQQYFT  60
TSQQPQTQPV KRKRNLPGNP GLVWVQKALY LNTILFCYLF CSFPYLLSLS LSETQFLMHF  120
LGGFFVFYFE SDPDAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK  180
QRTNKEVRKK VYVCPETNCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS  240
DWKAHSKTCG TREYRCDCGT LFSRRDSFIT HRAFCDALAV ESARAINPLL SPHQPGTAAA  300
SHMNLQVPQF NPHDIKLQPF SLKKEQQSFT PLRPEIPPWL ASQPMLGAGP GPPHPIDLSS  360
SSSSIFSQRL DHQDLTLHGT PSANPSLVPT LPPYHHTALP SPHMSATALL QKAAHMGATM  420
SRKSGSSSVP STVAAAASAS LMRPHQQTHV SADSAGTNNN TTTAGFGLDL PSREELDVGS  480
SSGIIHGLAP FGNRKPAANA GDDDDDNNNI AGTGATPSLL QDMINSLSSA TGFDATNSFD  540
DIAFGGIFNA TKKLCGSSIN ESFSKTTTPT VPTTTNATRN DHHGSTAGST TTTTTQGGDQ  600
GLTRDFLGLR AFSHTDILNI AGPGRNYCID TSQEQHNQSQ KPWQG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177189KLKQRTNKEVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.98080.0boll| ovule| root
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5271320.0HQ527132.1 Gossypium herbaceum clone NBRI_D2_310 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442745.10.0PREDICTED: protein indeterminate-domain 7 isoform X1
SwissprotQ8H1F51e-112IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A0D2ULS00.0A0A0D2ULS0_G
STRINGVIT_09s0002g02300.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.13e-93indeterminate(ID)-domain 2